Contigs and singletons
WebNov 20, 2009 · The number of contigs and singletons is much higher compared to the ZM_BF assembly because the proportion of mate-pairs was much lower, the ESTs are from different cultivars, and the quality of some sets of ESTs may be low. There were 10,618 contigs containing only ESTs from the ZM_BF libraries, representing 10k potential … WebEnter the email address you signed up with and we'll email you a reset link.
Contigs and singletons
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WebSep 22, 2014 · Posts: 1103. #2. 09-17-2014, 11:20 AM. There are probably several different meanings for the word. 1) Before assembly reads will often be grouped into "pairs" (ones … WebLarge-scale EST sequences from C. ehrenbergii cDNA were determined (790 K sequence reads, 332 Mb), comprising 21,177 contigs and 15,299 valid singletons (Table 2).Furthermore, these contigs ...
WebJul 26, 2011 · Our reads were assembled into 93,627 contigs (38,256,084 bp) and 309,074 singletons (69,524,702 bp), with an overall total of 402,701 unigenes (107,780,786 bp) that were deposited in a newly developed database called SiESTa (Silene EST annotations) (Table 1). All reads may be accessed under the accession number ERP000371 in the … WebIn the context of genome assemblies, a singleton is a non-assembled read, usually a contamination or bad quality read. In gene context, it refers to a non-duplicate gene. …
WebAug 14, 2024 · The genes on the contigs that were a mixture of singletons and non-singletons tended to emerge from the same species or genus. Only 8,557 (0.8%) of all mixture contigs in the oral microbiome contained potential cross-genus HGT. In the gut, there were 33,224 of these cross-genus, mixture contigs, a total of 1.8%. Webof which 𝐺𝑆are singletons. These need to be considered—together with𝐾—as estimated parameters,soourpreviousequationbecomes: 𝑞∗ = (𝑀 + 𝑀𝑆 𝑀 + 𝑀 𝑆− 1)(𝑁 + 𝑀𝑆− 1 𝑁 + 𝑀− 𝐾 − 𝐺) (3) In this case, dropping singleton groups not only removes 𝑀𝑆from the equation—
Webimage showing the five body sites with available samples. All the metagenomic viral contigs identified in each body site can be accessed from the circles in the image. (c) Table …
WebApproximately 74% of the 3.3 million high quality sequences were assembled into contigs with a total length of 71 Mb. The final unique set of contigs and singletons from the … ions of manganeseWebDownload Table Annotation of RNA-seq contigs and singletons from publication: A putative role for amino acid permeases in sink-source communication of barley tissues uncovered by RNA-seq ... on the fringe gabions of k2oWebMay 18, 2012 · Several contigs and singletons were identified as CC and C-X-C motif chemokines. For the IFNs group, there was a unique contig presenting homology to D. … ions of mgWebThe full-length enriched EST data were clustered and assembled into unique sequences, contigs, and singletons. The PiGenome provides functional annotation, identification of … on the fringe archbald paIn 1980, Staden wrote: In order to make it easier to talk about our data gained by the shotgun method of sequencing we have invented the word "contig". A contig is a set of gel readings that are related to one another by overlap of their sequences. All gel readings belong to one and only one contig, and each contig … See more A contig (from contiguous) is a set of overlapping DNA segments that together represent a consensus region of DNA. In bottom-up sequencing projects, a contig refers to overlapping sequence data (reads); … See more A sequence contig is a continuous (not contiguous) sequence resulting from the reassembly of the small DNA fragments generated by bottom-up sequencing strategies. This … See more • Staden Package See more Contig can also refer to the overlapping clones that form a physical map of a chromosome when the top-down or hierarchical sequencing strategy is used. In this sequencing … See more • Definition of the term and historical perspective • Staden package of sequence assembly: Definitions and background information See more onthefringe.com rumbleWebDownload Table BLASTX hits of contigs and singletons in the eight individual libraries with different proteomes from publication: Comparative high-throughput transcriptome sequencing and ... ions of h2o